- A political level, composed by the General Assembly and the Board of Directors.

- A strategic leadership level, that is conducted by the Directorate composed by an executive director and four thematic directors, whom are supported by three managers (Operations, Human Resources, and Financial-Administrative).

- An operating level, made up of the Strategic Action Units (SAU) that are in charge of the execution of technical processes.

- The institution is supported by a Services Center, which operates along all the processes in order to facilitate the administrative and financial issues.

Currently there are twelve Strategic Action Units, conducted by institutional leaders. Three of these units (INBioparque, Editorial and Bioprospecting) are lead by managers, which have to conduct not only technical but business processes. The structure allows also the creation of temporary units to carry out specific projects in a specific time frame.